PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G213800.1
Common NameB456_009G213800, LOC105770324
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 334aa    MW: 35715.7 Da    PI: 5.638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G213800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.9e-16150196455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Gorai.009G213800.1 150 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 196
                         6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.1E-20143206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-20143206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.95E-18149200No hitNo description
PfamPF000102.0E-13150196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MADLYGGAPY SNPETEEIST ILNQLLHNSS SSSSSSSSCM QFKGKNIHSF PSPVPGISTP  60
AANSGAGMGI PVMDRYRLGG LAVRIESEPR VNISDPETYF GANVKDSADN ALSSACDFSY  120
DSEKVPDASE VPSNQERPRS SSKRSRAAEV HNLSEKRRRS RINEKMKALQ NLIPNSNKTD  180
KASMLDEAIE YLKQLQLQVQ MLSMRNGLSL YPMCLPGVPQ PMQMPPTGLG YDEGHGFFSP  240
NIGAGTFSSN EESSMNTPFN LSNPCTISNL PVVAPSVANM SNLEASIGFE SPAGAHYGSF  300
THSTSSKEIC KEGRSQIELE MNHGGNSSSS GVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446925.10.0PREDICTED: transcription factor SPATULA-like isoform X1
SwissprotQ9FUA44e-41SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A0D2URL00.0A0A0D2URL0_G
STRINGPOPTR_0014s02590.13e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41992754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-41bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]